(Hitachi Software Engneering America Ltd. MiraiBio Group.)

Hitachi

DNASIS MAX Contig Management

Streamline Your Assemblies with Optional Phred/Phrap

Phred/Phrap is a fast and accurate sequence assembly program developed by Washington University. Widely considered to be the gold standard in genome analysis, Phred/Phrap is used extensively worldwide. Originally available only as a UNIX command line program, MiraiBio offers Phred/Phrap on Windows in DNASIS MAX as an optional module. The DNASIS MAX Contig Manager GUI program works in unison with Phred/Phrap, enabling those unfamiliar with UNIX to easily assemble sequences.

Phred

Base call trace files from automated sequencers and evaluates the quality value for more objective sequence evaluation. File formats supported: ABI PRISMR 373, 377, 3700, SCF.

Phrap

Assemble contiguous sequences easily and accurately using Phred quality values. File formats supported: Phred and FASTA

Contig Manager

  • Manage sequences, trace data, and quality values
  • Save assembly results as projects
  • Trim vectors, add, edit, and reassemble fragments
  • Identify single nucleotide polymorphisms (SNPs)

Contig Viewer

  • Map View: visualize contig fragments and quality values at different zoom levels
  • Sequence View: visualize aligned sequences with  unmatched/low quality region marking

Automation

Process more than 10,000 sequences automatically using DNASIS MAX Contig Management Phred/Phrap option and DNASpace.


Contig Manager
contig manager
Contig Viewer
contig viewer
Contig Manger Trace Viewer
Contig Manager Trace Viewer