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DNASIS MAX Contig Management

Streamline Your Assemblies with Optional Phred/Phrap

Phred/Phrap is a fast and accurate sequence assembly program developed by Washington University. Widely considered to be the gold standard in genome analysis, Phred/Phrap is used extensively worldwide. Originally available only as a UNIX command line program, MiraiBio offers Phred/Phrap on Windows in DNASIS MAX as an optional module. The DNASIS MAX Contig Manager GUI program works in unison with Phred/Phrap, enabling those unfamiliar with UNIX to easily assemble sequences.

Phred

Base call trace files from automated sequencers and evaluates the quality value for more objective sequence evaluation. File formats supported: ABI PRISMR 373, 377, 3700, SCF.

Phrap

Assemble contiguous sequences easily and accurately using Phred quality values. File formats supported: Phred and FASTA

Contig Manager

  • Manage sequences, trace data, and quality values
  • Save assembly results as projects
  • Trim vectors, add, edit, and reassemble fragments
  • Identify single nucleotide polymorphisms (SNPs)

Contig Viewer

  • Map View: visualize contig fragments and quality values at different zoom levels
  • Sequence View: visualize aligned sequences with  unmatched/low quality region marking

Automation

Process more than 10,000 sequences automatically using DNASIS MAX Contig Management Phred/Phrap option and DNASpace.


Contig Manager
contig manager
Contig Viewer
contig viewer
Contig Manger Trace Viewer
Contig Manager Trace Viewer


 
For DNASIS MAV v2.6.6 users, please note that there is an Entrez patch available (8/01/07)

For DNASIS MAX v2.6.6-2.7 users, please note that there is an Internet Blast patch available (7/03/07)
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